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1

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types

Shulse, Christine N., Cole, Benjamin J., Ciobanu, Doina, Lin, Junyan, Yoshinaga, Yuko, Gouran, Mona, Turco, Gina M., Zhu, Yiwen, O’Malley, Ronan C., Brady, Siobhan M., Dickel, Diane E.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.69 MB

english, 2019

2

Gene regulatory networks in the Arabidopsis root

De Lucas, Miguel, Brady, Siobhan M

Journal:

Current Opinion in Plant Biology

Year:

2013

Language:

english

File:

PDF, 621 KB

english, 2013

3

50 years of Arabidopsis research: highlights and future directions

Provart, Nicholas J., Alonso, Jose, Assmann, Sarah M., Bergmann, Dominique, Brady, Siobhan M., Brkljacic, Jelena, Browse, John, Chapple, Clint, Colot, Vincent, Cutler, Sean, Dangl, Jeff, Ehrhardt, Dav

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 2.22 MB

english, 2016

4

RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation

Murphy, Evan, Vu, Lam Dai, Van den Broeck, Lisa, Lin, Zhefeng, Ramakrishna, Priya, van de Cotte, Brigitte, Gaudinier, Allison, Goh, Tatsuaki, Slane, Daniel, Beeckman, Tom, Inzé, Dirk, Brady, Siobhan M

Journal:

Journal of Experimental Botany

Year:

2016

Language:

english

File:

PDF, 18.27 MB

english, 2016

5

An economic cost analysis of an expanding, multi-state behavioural telehealth intervention

Yilmaz, Siobhan K, Horn, Brady P, Fore, Chris, Bonham, Caroline A

Journal:

Journal of Telemedicine and Telecare

Year:

2018

Language:

english

File:

PDF, 127 KB

english, 2018

6

Complete substitution of a secondary cell wall with a primary cell wall in Arabidopsis

Sakamoto, Shingo, Somssich, Marc, Nakata, Miyuki T., Unda, Faride, Atsuzawa, Kimie, Kaneko, Yasuko, Wang, Ting, Bågman, Anne-Maarit, Gaudinier, Allison, Yoshida, Kouki, Brady, Siobhan M., Mansfield, S

Journal:

Year:

2018

Language:

english

File:

PDF, 1.60 MB

english, 2018

7

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types

Shulse, Christine N., Cole, Benjamin J., Ciobanu, Doina, Lin, Junyan, Yoshinaga, Yuko, Gouran, Mona, Turco, Gina M., Zhu, Yiwen, O’Malley, Ronan C., Brady, Siobhan M., Dickel, Diane E.

Journal:

Year:

2019

File:

PDF, 2.69 MB

2019

8

Towards Development of Fluorescence Quenching-Based Biosensors for Drought Stress in Plants

Sharmah, Arjun, Kraus, Michael, Cutler, Sean, Siegel, Justin B., Brady, Siobhan, Guo, Ting

Journal:

Analytical Chemistry

Year:

2019

Language:

english

File:

PDF, 520 KB

english, 2019

9

Towards Development of Fluorescence Quenching-Based Biosensors for Drought Stress in Plants

Sharmah, Arjun, Kraus, Michael, Cutler, Sean, Siegel, Justin B., Brady, Siobhan, Guo, Ting

Journal:

Analytical Chemistry

Year:

2019

File:

PDF, 520 KB

2019

10

Converging on Bladder Health through Design Thinking: From an Ecology of Influence to a Focused Set of Research Questions

B. Lewis, Jessica, S. Brady, Sonya, Sutcliffe, Siobhan, L. Smith, Ariana, R. Mueller, Elizabeth, Rudser, Kyle, D. Markland, Alayne, Stapleton, Ann, Gahagan, Sheila, Cunningham, Shayna D.

Journal:

International Journal of Environmental Research and Public Health

Year:

2020

File:

PDF, 2.16 MB

2020

11

Extreme breeding: Leveraging genomics for crop improvement

Siobhan M Brady, Nicholas J Provart

Journal:

Journal of the Science of Food and Agriculture

Year:

2007

Language:

english

File:

PDF, 121 KB

english, 2007

12

The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis

Siobhan Mary Brady, Sara F. Sarkar, Dario Bonetta, Peter McCourt

Journal:

The Plant Journal

Year:

2003

Language:

english

File:

PDF, 222 KB

english, 2003

13

Hormone Cross-Talk in Seed Dormancy

Siobhan M. Brady, Peter McCourt

Journal:

Journal of Plant Growth Regulation

Year:

2003

Language:

english

File:

PDF, 130 KB

english, 2003

14

The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses

Kiana Toufighi, Siobhan M. Brady, Ryan Austin, Eugene Ly, Nicholas J. Provart

Journal:

The Plant Journal

Year:

2005

Language:

english

File:

PDF, 962 KB

english, 2005

15

Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips

Bhavna Chaudhuri, Friederike Hörmann, Sylvie Lalonde, Siobhan M. Brady, David A. Orlando, Philip Benfey, Wolf B. Frommer

Journal:

The Plant Journal

Year:

2008

Language:

english

File:

PDF, 912 KB

english, 2008

16

Getting and gaining from interviews

Brady, Siobhán, Johnson, Marc

Journal:

Year:

2008

Language:

english

File:

PDF, 515 KB

english, 2008

17

Erratum to: Ankylosing spondylitis in Ireland: patient access and response to TNF-α blockers

Saeed, Aamir, Khan, Mumtaz, Elmamoun, Musaab, Brady, Mary, Morrissey, Siobhan, Fraser, Alexander Duncan

Journal:

Rheumatology International

Year:

2012

File:

PDF, 100 KB

2012

18

Novel biological insights revealed from cell type-specific expression profiling

Mallorie Taylor-Teeples, Mily Ron, Siobhan M Brady

Journal:

Current Opinion in Plant Biology

Year:

2011

Language:

english

File:

PDF, 353 KB

english, 2011

19

Detecting separate time scales in genetic expression data

David A Orlando, Siobhan M Brady, Thomas MA Fink, Philip N Benfey, Sebastian E Ahnert

Journal:

Year:

2010

Language:

english

File:

PDF, 1.51 MB

english, 2010

20

Systems Approaches to Identifying Gene Regulatory Networks in Plants

Long, Terri A., Brady, Siobhan M., Benfey, Philip N.

Journal:

Annual Review of Cell and Developmental Biology

Year:

2008

Language:

english

File:

PDF, 645 KB

english, 2008

21

Lipoxins: revelations on resolution

Blaithin McMahon, Siobhan Mitchell, Hugh R. Brady, Catherine Godson

Journal:

Trends in Pharmacological Sciences

Year:

2001

Language:

english

File:

PDF, 168 KB

english, 2001

22

A purpose built MRSA cohort unit

Fidelma Fitzpatrick, Olive.M. Murphy, Ann Brady, Siobhan Prout, Lynda E. Fenelon

Journal:

Journal of Hospital Infection

Year:

2000

Language:

english

File:

PDF, 99 KB

english, 2000

23

Mapping spatiotemporal gene regulatory networks in the Arabidopsis root stele

Mallorie Taylor-Teeples, Allison Gaudinier, Lifang Zhang, John Reece-Hoyes, Sebastian Ahnert, Marian Walhoug, Doreen Ware, Siobhan M. Brady

Journal:

Developmental Biology

Year:

2011

Language:

english

File:

PDF, 120 KB

english, 2011

24

The Plant Vascular System: Evolution, Development and Functions F

Lucas, William J., Groover, Andrew, Lichtenberger, Raffael, Furuta, Kaori, Yadav, Shri-Ram, Helariutta, Ykä, He, Xin-Qiang, Fukuda, Hiroo, Kang, Julie, Brady, Siobhan M., Patrick, John W., Sperry, Joh

Journal:

Journal of Integrative Plant Biology

Year:

2013

Language:

english

File:

PDF, 3.27 MB

english, 2013

25

Characteristics of deaths by suicide in Northern Ireland from 2005 to 2011 and use of health services prior to death

O׳Neill, Siobhan, Corry, Colette V., Murphy, Sam, Brady, Sharon, Bunting, Brendan P.

Journal:

Journal of Affective Disorders

Year:

2014

Language:

english

File:

PDF, 233 KB

english, 2014

26

Additions and corrections: A systems approach to understanding root development

Brady, Siobhan M., Benfey, Philip N.

Journal:

Canadian Journal of Botany

Year:

2006

File:

PDF, 25 KB

2006

27

A systems approach to understanding root development

Brady, Siobhan M., Benfey, Philip N.

Journal:

Canadian Journal of Botany

Year:

2006

Language:

english

File:

PDF, 112 KB

english, 2006

28

BEL1-LIKE HOMEODOMAIN6 and KNOTTED ARABIDOPSIS THALIANA7 Interact and Regulate Secondary Cell Wall Formation via Repression of REVOLUTA

Liu, Yuanyuan, You, Shijun, Taylor-Teeples, Mallorie, Li, Wenhua L., Schuetz, Mathias, Brady, Siobhan M., Douglas, Carl J.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.45 MB

english, 2014

29

The Economic Burden of PTSD in Northern Ireland

Ferry, Finola R., Brady, Sharon E., Bunting, Brendan P., Murphy, Samuel D., Bolton, David, O'Neill, Siobhan M.

Journal:

Journal of Traumatic Stress

Year:

2015

Language:

english

File:

PDF, 112 KB

english, 2015

30

Gene Regulatory Networks during Arabidopsis Root Vascular Development

El-Showk, Sedeer, Taylor-Teeples, Mallorie, Helariutta, Yrjo, Brady, Siobhan M.

Journal:

International Journal of Plant Sciences

Year:

2013

Language:

english

File:

PDF, 8.32 MB

english, 2013

31

Reassess the t Test: Interact with All Your Data via ANOVA

Brady, Siobhan M., Burow, Meike, Busch, Wolfgang, Carlborg, Örjan, Denby, Katherine J., Glazebrook, Jane, Hamilton, Eric S., Harmer, Stacey L., Haswell, Elizabeth S., Maloof, Julin N., Springer, Natha

Journal:

Year:

2015

Language:

english

File:

PDF, 350 KB

english, 2015

32

Combining Expression and Comparative Evolutionary Analysis. The COBRA Gene Family

Siobhan M. Brady, Shuang Song, Kanwarpal S. Dhugga, J. Antoni Rafalski and Philip N. Benfey

Journal:

PLANT PHYSIOLOGY

Year:

2007

Language:

english

File:

PDF, 4.65 MB

english, 2007

33

Systems Biology Update: Cell Type-Specific Transcriptional Regulatory Networks

Li Pu and Siobhan Brady

Journal:

PLANT PHYSIOLOGY

Year:

2010

Language:

english

File:

PDF, 1.70 MB

english, 2010

34

Unraveling the Dynamic Transcriptome

Philip N. Benfey, Siobhan M. Brady and Terri A. Long

Journal:

Year:

2006

Language:

english

File:

PDF, 2.27 MB

english, 2006

35

Ivacaftor Imaging Response in Cystic Fibrosis

Hoare, Siobhan, McEvoy, Sinead, McCarthy, Colin J., Kilcoyne, Aoife, Brady, Darragh, Gibney, Brian, Gallagher, Charles G., McKone, Edward F., Dodd, Jonathan D.

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2014

Language:

english

File:

PDF, 580 KB

english, 2014

36

Web-Queryable Large-Scale Data Sets for Hypothesis Generation in Plant Biology

Siobhan M. Brady and Nicholas J. Provart

Journal:

Year:

2009

Language:

english

File:

PDF, 3.69 MB

english, 2009

37

Systems Analysis of Plant Functional, Transcriptional, Physical Interaction, and Metabolic Networks

George W. Bassel, Allison Gaudinier, Siobhan M. Brady, Lars Hennig, Seung Y. Rhee and Ive De Smet

Journal:

Year:

2012

Language:

english

File:

PDF, 2.88 MB

english, 2012

38

Identification of Novel Loci Regulating Interspecific Variation in Root Morphology and Cellular Development in Tomato

Mily Ron, Michael W. Dorrity, Miguel de Lucas, Ted Toal, R. Ivan Hernandez, Stefan A. Little, Julin N. Maloof, Daniel J. Kliebenstein and Siobhan M. Brady

Journal:

PLANT PHYSIOLOGY

Year:

2013

Language:

english

File:

PDF, 3.30 MB

english, 2013

39

Feasibility of low-dose CT with model-based iterative image reconstruction in follow-up of patients with testicular cancer

Murphy, Kevin P., Crush, Lee, O’Neill, Siobhan B., Foody, James, Breen, Micheál, Brady, Adrian, Kelly, Paul J., Power, Derek G., Sweeney, Paul, Bye, Jackie, O’Connor, Owen J., Maher, Michael M., O’Reg

Journal:

European Journal of Radiology Open

Year:

2016

Language:

english

File:

PDF, 1.39 MB

english, 2016

40

Molecular control of crop shade avoidance

Carriedo, Leonela G, Maloof, Julin N, Brady, Siobhan M

Journal:

Current Opinion in Plant Biology

Year:

2016

Language:

english

File:

PDF, 507 KB

english, 2016

41

A brief history of the TDIF-PXY signalling module: balancing meristem identity and differentiation during vascular development

Etchells, J. Peter, Smit, Margot E., Gaudinier, Allison, Williams, Clara J., Brady, Siobhan M.

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 2.92 MB

english, 2016

42

Transcriptional networks: The next generation

Brady, Siobhan M., Provart, Nicholas

Journal:

Current Plant Biology

Year:

2015

Language:

english

File:

PDF, 113 KB

english, 2015

43

A tomato phloem-mobile protein regulates the shoot-to-root ratio by mediating the auxin response in distant organs

Spiegelman, Ziv, Ham, Byung-Kook, Zhang, Zhaoliang, Toal, Ted W., Brady, Siobhan M., Zheng, Yi, Fei, Zhangjun, Lucas, William J., Wolf, Shmuel

Journal:

The Plant Journal

Year:

2015

Language:

english

File:

PDF, 1.66 MB

english, 2015

44

Risk-Reducing Salpingo-Oophorectomy for BRCA Carriers

Liu, Cici, Monier, Elizabeth, Brady, Rachel, Kehoe, Siobhan

Journal:

Obstetrics & Gynecology

Year:

2016

Language:

english

File:

PDF, 75 KB

english, 2016

45

Plant developmental responses to climate change

Gray, Sharon B., Brady, Siobhan M.

Journal:

Developmental Biology

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

46

Indel Group in Genomes (IGG) Molecular Genetic Markers

Toal, Ted W., Burkart-Waco, Diana, Howell, Tyson, Ron, Mily, Kuppu, Sundaram, Britt, Anne, Chetelat, Roger, Brady, Siobhan M.

Journal:

PLANT PHYSIOLOGY

Year:

2016

Language:

english

File:

PDF, 1.70 MB

english, 2016

47

Early- and late-stage morphea subtypes with deep tissue involvement is treatable with Abatacept (Orencia)

Adeeb, Fahd, Anjum, Shakeel, Hodnett, Philip, Kashif, Ahmad, Brady, Mary, Morrissey, Siobhan, Devlin, Joseph, Fraser, Alexander Duncan

Journal:

Seminars in Arthritis and Rheumatism

Year:

2016

Language:

english

File:

PDF, 1.48 MB

english, 2016

48

In memoriam – Sharon B. Gray

Leakey, Andrew D.B., Brady, Siobhan M., Markelz, Robert Cody J.

Journal:

Developmental Biology

Year:

2016

Language:

english

File:

PDF, 666 KB

english, 2016

49

Integrating culturally informed approaches into the physiotherapy assessment and treatment of chronic pain: protocol for a pilot randomised controlled trial

Brady, Bernadette, Veljanova, Irena, Schabrun, Siobhan, Chipchase, Lucinda

Journal:

Year:

2017

Language:

english

File:

PDF, 626 KB

english, 2017

50

Nuclear transcriptomes at high resolution using retooled INTACT

Reynoso, Mauricio, Pauluzzi, Germain, Kajala, Kaisa, Cabanlit, Sean, Velasco, Joel, Bazin, Jérémie, Deal, Roger, Sinha, Neelima, Brady, Siobhan M., Bailey-Serres, Julia

Journal:

PLANT PHYSIOLOGY

Year:

2017

Language:

english

File:

PDF, 5.72 MB

english, 2017

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